4KYX | pdb_00004kyx

Crystal structure of ADP-ribose pyrophosphatase MutT from Rickettsia felis

• PDB DOI: https://doi.org/10.2210/pdb4KYX/pdb

• Classification: HYDROLASE
• Organism(s): Rickettsia felis URRWXCal2
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2013-05-29 Released: 2013-08-07 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.256 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.213 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.215 (Depositor) 

Literature

Crystal structure of ADP-ribose pyrophosphatase MutT from Rickettsia felis

Abendroth, J., Clifton, M.C., Lorimer, D., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 35.05 kDa 
• Atom Count: 2,417 
• Modeled Residue Count: 273 
• Deposited Residue Count: 298 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ADP-ribose pyrophosphatase MutT	A, B	149	Rickettsia felis URRWXCal2	Mutation(s): 0  Gene Names: mutT, RF_0595 EC: 3.6.1
UniProt
Find proteins for Q4ULX7 (Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)) Explore Q4ULX7  Go to UniProtKB:  Q4ULX7

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.256 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.213 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.215 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M34KYX

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.98	α = 90
b = 63.78	β = 90
c = 71.72	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
Blu-Ice	data collection
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-08-07 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2013-08-07
  Type: Initial release
  
• Version 1.1: 2024-02-28
  Changes: Data collection, Database references