3S2I | pdb_00003s2i

Crystal Structure of FurX NADH+:Furfuryl alcohol II

PDB DOI: https://doi.org/10.2210/pdb3S2I/pdb

Classification: OXIDOREDUCTASE
Organism(s): Cupriavidus pinatubonensis JMP134
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-05-16 Released: 2012-06-13
Deposition Author(s): Hayes, R., Sanchez, E.J., Webb, B.N., Hooper, T., Nissen, M.S., Li, Q., Xun, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.249 (Depositor), 0.240 (DCC)
R-Value Work:
0.201 (Depositor), 0.200 (DCC)
R-Value Observed:
0.202 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structures and furfural reduction mechanism of a bacterial zinc-dependent alcohol dehydrogenase

Hayes, R., Sanchez, E.J., Webb, B.N., Hooper, T., Nissen, M.S., Li, Q., Xun, L.

To be published.

Macromolecule Content

Total Structure Weight: 290.4 kDa
Atom Count: 21,831
Modeled Residue Count: 2,720
Deposited Residue Count: 2,720
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc-containing alcohol dehydrogenase superfamily	A, B, C, D, E A, B, C, D, E, F, G, H	340	Cupriavidus pinatubonensis JMP134	Mutation(s): 0 Gene Names: Reut_B3677 EC: 1.1.1.1
UniProt
Find proteins for Q46UZ9 (Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)) Explore Q46UZ9 Go to UniProtKB: Q46UZ9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q46UZ9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAD Query on NAD Download Ideal Coordinates CCD File SDF format, chain RA [auth H] SDF format, chain KA [auth G] MOL2 format, chain RA [auth H] MOL2 format, chain KA [auth G] mmCIF format, chain RA [auth H] mmCIF format, chain KA [auth G]	KA [auth G], RA [auth H]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C₂₁ H₂₇ N₇ O₁₄ P₂ BAWFJGJZGIEFAR-NNYOXOHSSA-N		Interactions Focus chain KA [auth G] Focus chain RA [auth H] Interactions & Density Focus chain KA [auth G] Focus chain RA [auth H]
FU2 Query on FU2 Download Ideal Coordinates CCD File SDF format, chain Z [auth D] SDF format, chain U [auth C] SDF format, chain P [auth B] SDF format, chain K [auth A] SDF format, chain IA [auth F] SDF format, chain EA [auth E] MOL2 format, chain Z [auth D] MOL2 format, chain U [auth C] MOL2 format, chain P [auth B] MOL2 format, chain K [auth A] MOL2 format, chain IA [auth F] MOL2 format, chain EA [auth E] mmCIF format, chain Z [auth D] mmCIF format, chain U [auth C] mmCIF format, chain P [auth B] mmCIF format, chain K [auth A] mmCIF format, chain IA [auth F] mmCIF format, chain EA [auth E]	EA [auth E] IA [auth F] K [auth A] P [auth B] U [auth C] EA [auth E], IA [auth F], K [auth A], P [auth B], U [auth C], Z [auth D]	FURFURAL C₅ H₄ O₂ HYBBIBNJHNGZAN-UHFFFAOYSA-N		Interactions Focus chain EA [auth E] Focus chain IA [auth F] Focus chain K [auth A] Focus chain P [auth B] Focus chain U [auth C] Focus chain Z [auth D] Interactions & Density Focus chain EA [auth E] Focus chain IA [auth F] Focus chain K [auth A] Focus chain P [auth B] Focus chain U [auth C] Focus chain Z [auth D]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain W [auth C] SDF format, chain V [auth C] SDF format, chain TA [auth H] SDF format, chain SA [auth H] SDF format, chain R [auth B] SDF format, chain Q [auth B] SDF format, chain OA [auth G] SDF format, chain NA [auth G] SDF format, chain M [auth A] SDF format, chain L [auth A] SDF format, chain JA [auth F] SDF format, chain FA [auth E] SDF format, chain BA [auth D] SDF format, chain AA [auth D] MOL2 format, chain W [auth C] MOL2 format, chain V [auth C] MOL2 format, chain TA [auth H] MOL2 format, chain SA [auth H] MOL2 format, chain R [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain OA [auth G] MOL2 format, chain NA [auth G] MOL2 format, chain M [auth A] MOL2 format, chain L [auth A] MOL2 format, chain JA [auth F] MOL2 format, chain FA [auth E] MOL2 format, chain BA [auth D] MOL2 format, chain AA [auth D] mmCIF format, chain W [auth C] mmCIF format, chain V [auth C] mmCIF format, chain TA [auth H] mmCIF format, chain SA [auth H] mmCIF format, chain R [auth B] mmCIF format, chain Q [auth B] mmCIF format, chain OA [auth G] mmCIF format, chain NA [auth G] mmCIF format, chain M [auth A] mmCIF format, chain L [auth A] mmCIF format, chain JA [auth F] mmCIF format, chain FA [auth E] mmCIF format, chain BA [auth D] mmCIF format, chain AA [auth D]	AA [auth D] BA [auth D] FA [auth E] JA [auth F] L [auth A] AA [auth D], BA [auth D], FA [auth E], JA [auth F], L [auth A], M [auth A], NA [auth G], OA [auth G], Q [auth B], R [auth B], SA [auth H], TA [auth H], V [auth C], W [auth C]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain AA [auth D] Focus chain BA [auth D] Focus chain FA [auth E] Focus chain JA [auth F] Focus chain L [auth A] Focus chain M [auth A] Focus chain NA [auth G] Focus chain OA [auth G] Focus chain Q [auth B] Focus chain R [auth B] Focus chain SA [auth H] Focus chain TA [auth H] Focus chain V [auth C] Focus chain W [auth C] Interactions & Density Focus chain AA [auth D] Focus chain BA [auth D] Focus chain FA [auth E] Focus chain JA [auth F] Focus chain L [auth A] Focus chain M [auth A] Focus chain NA [auth G] Focus chain OA [auth G] Focus chain Q [auth B] Focus chain R [auth B] Focus chain SA [auth H] Focus chain TA [auth H] Focus chain V [auth C] Focus chain W [auth C]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain Y [auth D] SDF format, chain X [auth D] SDF format, chain T [auth C] SDF format, chain S [auth C] SDF format, chain QA [auth H] SDF format, chain PA [auth H] SDF format, chain O [auth B] SDF format, chain N [auth B] SDF format, chain MA [auth G] SDF format, chain LA [auth G] SDF format, chain J [auth A] SDF format, chain I [auth A] SDF format, chain HA [auth F] SDF format, chain GA [auth F] SDF format, chain DA [auth E] SDF format, chain CA [auth E] MOL2 format, chain Y [auth D] MOL2 format, chain X [auth D] MOL2 format, chain T [auth C] MOL2 format, chain S [auth C] MOL2 format, chain QA [auth H] MOL2 format, chain PA [auth H] MOL2 format, chain O [auth B] MOL2 format, chain N [auth B] MOL2 format, chain MA [auth G] MOL2 format, chain LA [auth G] MOL2 format, chain J [auth A] MOL2 format, chain I [auth A] MOL2 format, chain HA [auth F] MOL2 format, chain GA [auth F] MOL2 format, chain DA [auth E] MOL2 format, chain CA [auth E] mmCIF format, chain Y [auth D] mmCIF format, chain X [auth D] mmCIF format, chain T [auth C] mmCIF format, chain S [auth C] mmCIF format, chain QA [auth H] mmCIF format, chain PA [auth H] mmCIF format, chain O [auth B] mmCIF format, chain N [auth B] mmCIF format, chain MA [auth G] mmCIF format, chain LA [auth G] mmCIF format, chain J [auth A] mmCIF format, chain I [auth A] mmCIF format, chain HA [auth F] mmCIF format, chain GA [auth F] mmCIF format, chain DA [auth E] mmCIF format, chain CA [auth E]	CA [auth E] DA [auth E] GA [auth F] HA [auth F] I [auth A] CA [auth E], DA [auth E], GA [auth F], HA [auth F], I [auth A], J [auth A], LA [auth G], MA [auth G], N [auth B], O [auth B], PA [auth H], QA [auth H], S [auth C], T [auth C], X [auth D], Y [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain CA [auth E] Focus chain DA [auth E] Focus chain GA [auth F] Focus chain HA [auth F] Focus chain I [auth A] Focus chain J [auth A] Focus chain LA [auth G] Focus chain MA [auth G] Focus chain N [auth B] Focus chain O [auth B] Focus chain PA [auth H] Focus chain QA [auth H] Focus chain S [auth C] Focus chain T [auth C] Focus chain X [auth D] Focus chain Y [auth D] Interactions & Density Focus chain CA [auth E] Focus chain DA [auth E] Focus chain GA [auth F] Focus chain HA [auth F] Focus chain I [auth A] Focus chain J [auth A] Focus chain LA [auth G] Focus chain MA [auth G] Focus chain N [auth B] Focus chain O [auth B] Focus chain PA [auth H] Focus chain QA [auth H] Focus chain S [auth C] Focus chain T [auth C] Focus chain X [auth D] Focus chain Y [auth D]