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 37DK | pdb_000037dk

Discovery of CNS Penetrant Transthyretin (TTR) Stabilizers with Heterocyclic Linkers


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.16 Å
  • R-Value Free: 
    0.212 (Depositor), 0.207 (DCC) 
  • R-Value Work: 
    0.182 (Depositor), 0.177 (DCC) 
  • R-Value Observed: 
    0.184 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history. 

Literature

Discovery of Neutral and Cerebrospinal Fluid Penetrant Transthyretin (TTR) Stabilizers with Heterocyclic Linkers.

Wang, T., Thuma, B.A., Wisniewska, H.M., Lee Johnson, Z., Tu, M., Byrnes, L.J., Cabral, S., Canterbury, D.P., Clemens, J., Coffey, S.B., Dow, R., Dowling, M.S., Fensome, A., Fleming, J., Futatsugi, K., Kalgutkar, A.S., Korczynska, M., Kung, D.W., Lapham, K., Lavergne, S.Y., Limberakis, C., Liu, S., Londregan, A.T., Loria, P.M., Mascitti, V., Moody, A.T., Novak, J.J., Piotrowski, D.W., Sharma, R., Shavnya, A., Stock, I.A., Tess, D.A., Tsai, A.S., Wei, L., Wenzel, Z., Wu, H.

(2026) J Med Chem 69: 22942-22953

  • DOI: https://doi.org/10.1021/acs.jmedchem.6c02318
  • Primary Citation Related Structures: 
    37DK, 37DN, 37EF

  • PubMed Abstract: 

    Human transthyretin (TTR) is associated with ATTR amyloidosis. Despite having approved agents against TTR, there is still an unmet medical need to develop novel agents, especially those that could have therapeutic effects in cerebrospinal fluid (CSF). Structure-based drug design (SBDD) in the thyroxine binding pocket of TTR identified a neutral hit. Further optimization led to compound 9, a neutral TTR tetramer stabilizer with single-digit nM SPR Kd potency and with improved ADME profile that could enable it to penetrate to CSF.


  • Organizational Affiliation: 
    • Pfizer Research & Development , 1 Portland Street, Cambridge, Massachusetts02139, United States.

Macromolecule Content 

  • Total Structure Weight: 28.07 kDa 
  • Atom Count: 2,304 
  • Modeled Residue Count: 231 
  • Deposited Residue Count: 254 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Transthyretin
A, B
127Homo sapiensMutation(s): 0 
Gene Names: TTR, PALB
UniProt & NIH Common Fund Data Resources
Find proteins for P02766 (Homo sapiens)
Explore P02766 
Go to UniProtKB:  P02766
PHAROS:  P02766
GTEx:  ENSG00000118271 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02766
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.16 Å
  • R-Value Free:  0.212 (Depositor), 0.207 (DCC) 
  • R-Value Work:  0.182 (Depositor), 0.177 (DCC) 
  • R-Value Observed: 0.184 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.26α = 90
b = 42.71β = 90
c = 64.13γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
STARANISOdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2026-10-07
    Type: Initial release
  • Version 1.1: 2026-11-04
    Changes: Database references