2V36 | pdb_00002v36

Crystal structure of gamma-glutamyl transferase from Bacillus subtilis

• PDB DOI: https://doi.org/10.2210/pdb2V36/pdb

• Classification: TRANSFERASE
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2007-06-13 Released: 2008-07-01 
• Deposition Author(s): Sharath, B., Prabhune, A.A., Suresh, C.G., Wilkinson, A.J., Brannigan, J.A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 
  0.249 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.220 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.221 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Gamma-Glutamyl Transferase

Sharath, B., Prabhune, A.A., Suresh, C.G., Wilkinson, A.J., Brannigan, J.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PQS (software)

Macromolecule Content 

• Total Structure Weight: 125.11 kDa 
• Atom Count: 8,372 
• Modeled Residue Count: 1,074 
• Deposited Residue Count: 1,138 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GAMMA-GLUTAMYLTRANSPEPTIDASE LARGE CHAIN	A, C	376	Bacillus subtilis	Mutation(s): 0  EC: 2.3.2.2 (PDB Primary Data), 3.4.19.13 (UniProt)
UniProt
Find proteins for P54422 (Bacillus subtilis (strain 168)) Explore P54422  Go to UniProtKB:  P54422

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
GAMMA-GLUTAMYLTRANSPEPTIDASE SMALL CHAIN	B, D	193	Bacillus subtilis	Mutation(s): 0  EC: 2.3.2.2 (PDB Primary Data), 3.4.19.13 (UniProt)
UniProt
Find proteins for P54422 (Bacillus subtilis (strain 168)) Explore P54422  Go to UniProtKB:  P54422

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free:  0.249 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.220 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.221 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.256	α = 90
b = 108.766	β = 90
c = 161.347	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-07-01 
Deposition Author(s): Sharath, B., Prabhune, A.A., Suresh, C.G., Wilkinson, A.J., Brannigan, J.A.

Revision History  

• Version 1.0: 2008-07-01
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-03-07
  Changes: Source and taxonomy
• Version 1.4: 2023-12-13
  Changes: Data collection, Database references, Other, Refinement description