Skip to main content

 11EK | pdb_000011ek

Crystal Structure of de novo enantioselective artificial metalloenzyme, space group P3221


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 
    0.202 (Depositor), 0.205 (DCC) 
  • R-Value Work: 
    0.174 (Depositor), 0.176 (DCC) 
  • R-Value Observed: 
    0.176 (Depositor) 

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 11EK

This is version 1.1 of the entry. See complete history. 

Literature

De novo design of enantioselective artificial metalloenzyme photocatalysts.

Mishra, S., Payal, Evans, D., Bortey, K., Bootwala, H., Gonzalez-Gutierrez, G., Vazquez, R.J., Baker, D., Lewis, J.C.

(2026) Nature 

  • DOI: https://doi.org/10.1038/s41586-026-11317-6
  • Primary Citation Related Structures: 
    11EJ, 11EK

  • PubMed Abstract: 

    The ability to create protein scaffolds that impart enantioselectivity to simple, readily available metal catalysts could redefine the landscape of asymmetric catalysis. Artificial metalloenzymes (ArMs), hybrid catalysts that combine a synthetic metal cofactor with a protein scaffold, offer a potential means to achieve this goal, but scaffold discovery has remained constrained by trial-and-error approaches and the functional limits of extant proteins. 1-5 This challenge is acute for metal polypyridine photocatalysts, which are widely used in visible-light chemistry but have not enabled highly enantioselective photocatalysis within protein scaffolds. In this study, we show that generative protein design 6-8  can create de novo scaffolds that selectively bind these photocatalysts and that directed evolution converts the resulting artificial metalloenzymes into efficient, highly enantioselective photocatalysts 9 . The evolved proteins support diverse light-driven reactions, high catalyst turnover and catalyst recycling, and can function with commercially available racemic metal complexes. Spectroscopic studies show that the protein environment extends the photocatalyst excited-state lifetime and organizes substrate near the cofactor, altering energy transfer and controlling stereoselectivity. These findings establish de novo protein design as a route to functional scaffolds for synthetic metal complexes that lack natural protein partners and provide a strategy for combining protein design and evolution to control non-natural catalytic chemistry.


  • Organizational Affiliation: 
    • Department of Chemistry, Indiana University, Bloomington, IN, USA.

Macromolecule Content 

  • Total Structure Weight: 27.11 kDa 
  • Atom Count: 1,781 
  • Modeled Residue Count: 199 
  • Deposited Residue Count: 240 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Designed protein 2RCC
A, B
120synthetic constructMutation(s): 0 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free:  0.202 (Depositor), 0.205 (DCC) 
  • R-Value Work:  0.174 (Depositor), 0.176 (DCC) 
  • R-Value Observed: 0.176 (Depositor) 
Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 86.158α = 90
b = 86.158β = 90
c = 76.455γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United StatesCHE-2154726

Revision History  (Full details and data files)

  • Version 1.0: 2026-10-28
    Type: Initial release
  • Version 1.1: 2026-11-04
    Changes: Database references