PDP

PYRIDOXAL-5'-DIPHOSPHATE

Created:	1999-07-08
Last modified:	2024-09-27

Find Related PDB Entry
2 entries where PDP is covalently linked to polymer or other heterogen groups

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	31
Chiral Atom Count	1
Bond Count	31
Aromatic Bond Count	6

2D diagram of PDP

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	PYRIDOXAL-5'-DIPHOSPHATE
Systematic Name (OpenEye OEToolkits)	(5-hydroxy-4-methanoyl-6-methyl-pyridin-3-yl)methyl phosphono hydrogen phosphate
Formula	C₈ H₁₁ N O₉ P₂
Molecular Weight	327.122
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	O=P(O)(O)OP(=O)(O)OCc1cnc(c(O)c1C=O)C
SMILES	CACTVS	3.341	Cc1ncc(CO[P](O)(=O)O[P](O)(O)=O)c(C=O)c1O
SMILES	OpenEye OEToolkits	1.5.0	Cc1c(c(c(cn1)COP(=O)(O)OP(=O)(O)O)C=O)O
Canonical SMILES	CACTVS	3.341	Cc1ncc(CO[P@@](O)(=O)O[P](O)(O)=O)c(C=O)c1O
Canonical SMILES	OpenEye OEToolkits	1.5.0	Cc1c(c(c(cn1)CO[P@](=O)(O)OP(=O)(O)O)C=O)O
InChI	InChI	1.03	InChI=1S/C8H11NO9P2/c1-5-8(11)7(3-10)6(2-9-5)4-17-20(15,16)18-19(12,13)14/h2-3,11H,4H2,1H3,(H,15,16)(H2,12,13,14)
InChIKey	InChI	1.03	BLPOUZDLIYAHLN-UHFFFAOYSA-N

Related Resource References

Resource Name	Reference
PubChem	125696

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.