5BT

5-bromo-2'-deoxycytidine

Created:	2011-01-25
Last modified:	2020-06-05

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1 entries where 5BT is found as a standalone ligand3 entries where 5BT is found in a polymer sequence

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Chemical Details
Formal Charge	0
Atom Count	29
Chiral Atom Count	3
Bond Count	30
Aromatic Bond Count	0

2D diagram of 5BT

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Chemical Component Summary
Name	5-bromo-2'-deoxycytidine
Synonyms	5-bromo-2'-doxy-D-cytidine
Systematic Name (OpenEye OEToolkits)	4-azanyl-5-bromo-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
Formula	C₉ H₁₂ Br N₃ O₄
Molecular Weight	306.113
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	BrC=1C(=NC(=O)N(C=1)C2OC(C(O)C2)CO)N
SMILES	CACTVS	3.370	NC1=NC(=O)N(C=C1Br)[CH]2C[CH](O)[CH](CO)O2
SMILES	OpenEye OEToolkits	1.7.0	C1C(C(OC1N2C=C(C(=NC2=O)N)Br)CO)O
Canonical SMILES	CACTVS	3.370	NC1=NC(=O)N(C=C1Br)[C@H]2C[C@H](O)[C@@H](CO)O2
Canonical SMILES	OpenEye OEToolkits	1.7.0	C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)Br)CO)O
InChI	InChI	1.03	InChI=1S/C9H12BrN3O4/c10-4-2-13(9(16)12-8(4)11)7-1-5(15)6(3-14)17-7/h2,5-7,14-15H,1,3H2,(H2,11,12,16)/t5-,6+,7+/m0/s1
InChIKey	InChI	1.03	KISUPFXQEHWGAR-RRKCRQDMSA-N

Related Resource References

Resource Name	Reference
PubChem	472175
ChEMBL	CHEMBL386413
CCDC/CSD	BAFPAZ, CALDEY

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