GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5XIW designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5XIW_GDP_B_501 | 57% | 49% | 0.199 | 0.975 | 0.89 | 1.08 | - | 4 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9GMY_GDP_B_501 | 100% | 50% | 0.034 | 0.992 | 1.05 | 0.89 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9YMG_GDP_B_501 | 100% | 56% | 0.034 | 0.99 | 0.98 | 0.71 | 2 | 1 | 0 | 0 | 100% | 1 |
| 9GNU_GDP_B_501 | 100% | 52% | 0.035 | 0.991 | 1.15 | 0.73 | 2 | - | 0 | 0 | 100% | 1 |
| 9F07_GDP_F_501 | 100% | 59% | 0.042 | 0.986 | 0.78 | 0.79 | - | 1 | 1 | 0 | 100% | 1 |
| 9C3Z_GDP_B_202 | 100% | 29% | 0.018 | 0.997 | 1.51 | 1.32 | 3 | 6 | 0 | 0 | 100% | 1 |
| 9C3N_GDP_B_202 | 100% | 42% | 0.02 | 0.997 | 1.26 | 1 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9C3L_GDP_A_201 | 100% | 49% | 0.021 | 0.997 | 0.91 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9C3K_GDP_B_201 | 100% | 40% | 0.014 | 0.998 | 1.15 | 1.18 | 1 | 3 | 0 | 0 | 100% | 1 |
| 9BL0_GDP_B_201 | 100% | 55% | 0.018 | 0.998 | 1.08 | 0.69 | 3 | 1 | 0 | 0 | 100% | 1 |
