GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5D3Q designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5D3Q_GDP_A_801 | 98% | 39% | 0.065 | 0.989 | 1.1 | 1.28 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5D3Q_GDP_B_801 | 98% | 34% | 0.066 | 0.985 | 1.18 | 1.42 | 3 | 6 | 3 | 0 | 100% | 1 |
| 2X2E_GDP_A_1744 | 99% | 41% | 0.044 | 0.978 | 1.06 | 1.21 | 3 | 3 | 0 | 0 | 100% | 1 |
| 2X2F_GDP_A_1747 | 89% | 39% | 0.099 | 0.979 | 1.05 | 1.33 | 2 | 5 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9C3K_GDP_A_201 | 100% | 39% | 0.016 | 0.998 | 1.17 | 1.21 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3L_GDP_A_201 | 100% | 49% | 0.021 | 0.997 | 0.91 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9C3N_GDP_B_202 | 100% | 42% | 0.02 | 0.997 | 1.26 | 1 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9C3Z_GDP_A_202 | 100% | 36% | 0.016 | 0.998 | 1.18 | 1.33 | 2 | 3 | 0 | 0 | 100% | 1 |
