UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 4EE4 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4EE4_UDP_B_405 | 24% | 22% | 0.198 | 0.828 | 1.03 | 2.15 | 2 | 8 | 0 | 0 | 100% | 1 |
| 4EE4_UDP_A_405 | 19% | 31% | 0.2 | 0.795 | 1.2 | 1.53 | 1 | 7 | 0 | 0 | 100% | 1 |
| 4EE4_UDP_C_405 | 17% | 32% | 0.219 | 0.797 | 0.89 | 1.77 | 2 | 9 | 4 | 0 | 100% | 1 |
| 4EEM_UDP_A_403 | 65% | 29% | 0.119 | 0.92 | 1.09 | 1.71 | 1 | 8 | 1 | 0 | 100% | 1 |
| 4EE5_UDP_B_404 | 60% | 25% | 0.122 | 0.907 | 1 | 2.04 | 1 | 8 | 0 | 0 | 100% | 1 |
| 4EEO_UDP_A_403 | 54% | 32% | 0.142 | 0.905 | 1.09 | 1.61 | 1 | 6 | 0 | 0 | 100% | 1 |
| 4EEG_UDP_A_403 | 52% | 24% | 0.149 | 0.905 | 1.16 | 1.92 | 1 | 8 | 0 | 0 | 100% | 1 |
| 2FYB_UDP_A_403 | 44% | 35% | 0.154 | 0.881 | 1.26 | 1.29 | 2 | 5 | 0 | 0 | 100% | 0.952 |
| 8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 3H4T_UDP_A_604 | 100% | 42% | 0.039 | 0.99 | 1.01 | 1.22 | 2 | 3 | 0 | 0 | 100% | 1 |
