8VQ6 | pdb_00008vq6

hCA-II-4-(2-Aminoethyl)benzenesulfonamide-complex. Two molecules of inhibitor bound to active site and secondary binding pocket

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3MHL

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		298	1.5 M NaCit, 0.1 M Tris, pH 8.5

Crystal Properties
Matthews coefficient	Solvent content
2.11	41.82

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 42.547	α = 90
b = 41.376	β = 104.566
c = 72.679	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2019-06-19	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 24-ID-E	0.97918	APS	24-ID-E

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.45	70.343	98.6	0.399	0.467	0.234	0.666	7	4.4		43063

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.45	1.47	95.9		0.105	3.6	4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.45	70.343	42990	2040	98.4	0.162	0.1605	0.1671	0.1894	0.1948	7.685

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.897		-1.077	1.437		-1.563

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.306
r_dihedral_angle_3_deg	13.396
r_dihedral_angle_2_deg	8.485
r_dihedral_angle_1_deg	6.995
r_rigid_bond_restr	4.334
r_lrange_it	2.407
r_lrange_other	2.256
r_angle_refined_deg	1.734
r_angle_other_deg	1.106
r_scangle_it	0.793
r_scangle_other	0.793
r_mcangle_it	0.723
r_mcangle_other	0.723
r_scbond_it	0.559
r_scbond_other	0.559
r_mcbond_it	0.481
r_mcbond_other	0.48
r_symmetry_xyhbond_nbd_refined	0.25
r_nbd_other	0.235
r_nbd_refined	0.199
r_symmetry_nbd_other	0.196
r_symmetry_nbd_refined	0.189
r_nbtor_refined	0.18
r_xyhbond_nbd_refined	0.132
r_chiral_restr	0.103
r_symmetry_nbtor_other	0.091
r_symmetry_xyhbond_nbd_other	0.084
r_metal_ion_refined	0.039
r_xyhbond_nbd_other	0.021
r_bond_refined_d	0.01
r_gen_planes_refined	0.01
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2049
Nucleic Acid Atoms
Solvent Atoms	247
Heterogen Atoms	40

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
REFMAC	phasing