7QLS | pdb_00007qls

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NADH, AND DIMETHOXYPHENYL ACETAMIDE

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1RRM

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	4.5	295.15	0.1 M Sodium acetate pH 4.5; 20 % (w/v) PEG 8000; 0.2 M NaF

Crystal Properties
Matthews coefficient	Solvent content
2.2	44.05

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 61.262	α = 90
b = 86.432	β = 90
c = 137.833	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 16M		2021-06-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	MAX IV BEAMLINE BioMAX	0.9762	MAX IV	BioMAX

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.4	73.34	100	0.034	0.999	14.1	13.3		29415			53.437

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.4	2.49	100		0.349	0.776	2.5	13.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1RRM	2.4	73.333	29354	1466	99.966	0.199	0.197	0.2	0.2298	0.24	59.748

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.394			-0.769		3.162

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.753
r_dihedral_angle_3_deg	14.281
r_dihedral_angle_4_deg	12.658
r_dihedral_angle_1_deg	7.099
r_lrange_it	4.866
r_lrange_other	4.864
r_mcangle_it	3.158
r_mcangle_other	3.158
r_scangle_it	3.119
r_scangle_other	3.118
r_angle_other_deg	2.325
r_mcbond_it	1.996
r_mcbond_other	1.996
r_scbond_it	1.904
r_scbond_other	1.904
r_angle_refined_deg	1.282
r_nbd_other	0.23
r_symmetry_nbd_other	0.219
r_symmetry_xyhbond_nbd_refined	0.207
r_nbd_refined	0.188
r_nbtor_refined	0.146
r_symmetry_nbd_refined	0.145
r_xyhbond_nbd_refined	0.133
r_ncsr_local_group_1	0.076
r_symmetry_nbtor_other	0.06
r_chiral_restr	0.052
r_bond_other_d	0.036
r_gen_planes_other	0.005
r_bond_refined_d	0.004
r_gen_planes_refined	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5692
Nucleic Acid Atoms
Solvent Atoms	77
Heterogen Atoms	102

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
REFMAC	phasing