SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D 1H-13C NOESY | 20 mM sodium acetate-1, 100 mM sodium chloride-2, 0.02 % sodium azide-3 | 90% H2O/10% D2O | 120 | 3.8 | ambient | 298 | |
| 2 | 3D 1H-15N NOESY | 20 mM sodium acetate-1, 100 mM sodium chloride-2, 0.02 % sodium azide-3 | 90% H2O/10% D2O | 120 | 3.8 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics, DGSA-distance geometry simulated annealing | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm | |
| 2 | collection | TopSpin | Bruker Biospin | |
| 3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 5 | data analysis | NMRView | Johnson, One Moon Scientific | |
| 6 | data analysis | KUJIRA | Kobayashi, N. | |
| 7 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 8 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm | |
