9N7B | pdb_00009n7b

SSU processome maturation and disassembly, State O

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth L4]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
D [auth L4]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
D [auth L4]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
E [auth L5]SCOP2B SuperfamilyRibosomal protein S7 8065993 3000799 SCOP2B (2022-06-29)
F [auth L6]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
H [auth L8]SCOP2B Superfamily50S Ribosomal protein L14-like 8053083 3000433 SCOP2B (2022-06-29)
K [auth LD]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052736 3002138 SCOP2B (2022-06-29)
K [auth LD]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)
L [auth LE]SCOP2B SuperfamilyRibosomal protein S8 8096922 3000709 SCOP2B (2022-06-29)
N [auth LG]SCOP2B SuperfamilyNucleic acid-binding proteins 8063430 3000135 SCOP2B (2022-06-29)
R [auth NF]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052974 3001284 SCOP2B (2022-06-29)
R [auth NF]SCOP2B SuperfamilyHomeodomain-like 8052973 3000001 SCOP2B (2022-06-29)
U [auth NM]SCOP2B SuperfamilyRibosomal S3Ae-like 8053211 3002166 SCOP2B (2022-06-29)
Y [auth NW]SCOP2B SuperfamilyWinged helix DNA-binding domain 8059235 3000034 SCOP2B (2022-06-29)
CA [auth SK]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
BA [auth SJ]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
S [auth NG]SCOP2B SuperfamilyTranslational machinery components 8095805 3000571 SCOP2B (2022-06-29)
J [auth LC]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth L3]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
D [auth L4]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
D [auth L4]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
D [auth L4]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
D [auth L4]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
D [auth L4]PF00467KOW motif (KOW)KOW motif- Family
E [auth L5]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
F [auth L6]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
H [auth L8]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
I [auth L9]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
I [auth L9]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
K [auth LD]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
K [auth LD]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
L [auth LE]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
M [auth LF]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
R [auth NF]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
V [auth NP]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
W [auth NQ]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
X [auth NS]PF04408Helicase associated domain (HA2), winged-helix (WHD_HA2)Helicase associated domain (HA2), winged-helixThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate wit ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3] and assure its correct function. This entry represents the WH domain, which connects the N- (RecA domains) and C-terminal domains (ratchet-like and OB-fold) of helicases.
Domain
X [auth NS]PF07717Oligonucleotide/oligosaccharide-binding (OB)-fold (OB_NTP_bind)Oligonucleotide/oligosaccharide-binding (OB)-foldThis family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss: ...This family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss:Q84VZ2. The structure PDB:3i4u adopts an OB-fold. helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins [1].
Domain
X [auth NS]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
X [auth NS]PF21010Helicase associated domain (HA2), ratchet-like (HA2_C)Helicase associated domain (HA2), ratchet-likeThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains c ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with the RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3]. This entry represents the ratchet-like domain, which may be important for RNA translocation [1,2].
Domain
Z [auth SH]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
Z [auth SH]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
AA [auth SI]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
AA [auth SI]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
BA [auth SJ],
CA [auth SK]		PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
DA [auth SL]PF04900Fcf1 (Fcf1)Fcf1Fcf1 is a nucleolar protein involved in pre-rRNA processing [1]. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits [1]. Domain
EA [auth SM]PF04427Brix domain (Brix)Brix domainDomain
FA [auth SR]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
JA [auth SW]PF17903Krr1 KH1 domain (KH_KRR1_1st)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1]. Domain
JA [auth SW]PF22891Eukaryotic type KH-domain (KH-domain type I) (KH_PNO1_2nd)Eukaryotic type KH-domain (KH-domain type I)This entry represents the second KH domain found in the PNO1 protein. PNO1 is part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. Domain
G [auth L7]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
IA [auth SU]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
S [auth NG]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
J [auth LC]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L1]18S rRNA---
B [auth L2]U3 snoRNA---
C [auth L3]40S ribosomal protein S18-A
D [auth L4]40S ribosomal protein S4-A
E [auth L5]40S ribosomal protein S5
F [auth L6]40S ribosomal protein S6-A
H [auth L8]40S ribosomal protein S8-A
I [auth L9]40S ribosomal protein S9-A
K [auth LD]40S ribosomal protein S11-A
L [auth LE]40S ribosomal protein S22-A
M [auth LF]40S ribosomal protein S24-A
N [auth LG]40S ribosomal protein S28-A
O [auth N2]U3snoRNA segment---
P [auth NA]U3 small nucleolar RNA-associated protein MPP10
R [auth NF]40S ribosomal protein S13
T [auth NL]Dimethyladenosine transferase
U [auth NM]Small ribosomal subunit protein eS1A
V [auth NP]40S ribosomal protein S19-A
W [auth NQ]40S ribosomal protein S27-A
X [auth NS]Probable ATP-dependent RNA helicase DHR1
Y [auth NW]40S ribosomal protein S25-A
Z [auth SH]RNA 3'-terminal phosphate cyclase-like protein
AA [auth SI]Ribosome biogenesis protein BMS1
BA [auth SJ],
CA [auth SK]		Ribosomal RNA small subunit methyltransferase NEP1
DA [auth SL]rRNA-processing protein FCF1
EA [auth SM]U3 small nucleolar ribonucleoprotein protein IMP4
FA [auth SR]40S ribosomal protein S23-A
GA [auth SS]U3 small nucleolar RNA-associated protein 14
HA [auth ST]Nucleolar complex protein 14
JA [auth SW]Pre-rRNA-processing protein PNO1
G [auth L7]40S ribosomal protein S7-A
KA [auth SZ]Essential nuclear protein 1
IA [auth SU]Nucleolar complex protein 4-
S [auth NG]40S ribosomal protein S14-A
Q [auth NB]Something about silencing protein 10
J [auth LC]40S ribosomal protein S16-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth L3]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
C [auth L3]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
C [auth L3]IPR001892Small ribosomal subunit protein uS13Family
C [auth L3]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
D [auth L4]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
D [auth L4]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
D [auth L4]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
D [auth L4]IPR002942RNA-binding S4 domainDomain
D [auth L4]IPR013845Small ribosomal subunit protein eS4, central regionDomain
D [auth L4]IPR000876Small ribosomal subunit protein eS4Family
D [auth L4]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth L4]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
D [auth L4]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
D [auth L4]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth L4]IPR005824KOWDomain
E [auth L5]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
E [auth L5]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
E [auth L5]IPR000235Small ribosomal subunit protein uS7Family
E [auth L5]IPR023798Small ribosomal subunit protein uS7 domainDomain
E [auth L5]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
F [auth L6]IPR014401Small ribosomal subunit protein eS6-likeFamily
F [auth L6]IPR001377Small ribosomal subunit protein eS6Family
F [auth L6]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth L8]IPR001047Small ribosomal subunit protein eS8Family
H [auth L8]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
H [auth L8]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
H [auth L8]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
I [auth L9]IPR002942RNA-binding S4 domainDomain
I [auth L9]IPR022801Small ribosomal subunit protein uS4Family
I [auth L9]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
I [auth L9]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
I [auth L9]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
I [auth L9]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
K [auth LD]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth LD]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
K [auth LD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth LD]IPR000266Small ribosomal subunit protein uS17Family
K [auth LD]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
L [auth LE]IPR000630Small ribosomal subunit protein uS8Family
L [auth LE]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
L [auth LE]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
M [auth LF]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
M [auth LF]IPR001976Small ribosomal subunit protein eS24Family
M [auth LF]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
M [auth LF]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
N [auth LG]IPR028626Ribosomal protein eS28 conserved siteConserved Site
N [auth LG]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth LG]IPR000289Small ribosomal subunit protein eS28Family
P [auth NA]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
R [auth NF]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
R [auth NF]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
R [auth NF]IPR000589Small ribosomal subunit protein uS15Family
R [auth NF]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
T [auth NL]IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmFamily
T [auth NL]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
T [auth NL]IPR020598Ribosomal RNA adenine methylase transferase, N-terminalDomain
T [auth NL]IPR011530Ribosomal RNA adenine dimethylaseFamily
T [auth NL]IPR020596Ribosomal RNA adenine methylase transferase, conserved siteConserved Site
U [auth NM]IPR001593Small ribosomal subunit protein eS1Family
U [auth NM]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
U [auth NM]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
V [auth NP]IPR001266Small ribosomal subunit protein eS19Family
V [auth NP]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
V [auth NP]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
V [auth NP]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
W [auth NQ]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
W [auth NQ]IPR000592Small ribosomal subunit protein eS27Family
W [auth NQ]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
X [auth NS]IPR011709DEAD-box helicase, OB foldDomain
X [auth NS]IPR001650Helicase, C-terminal domain-likeDomain
X [auth NS]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
X [auth NS]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
X [auth NS]IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
X [auth NS]IPR007502Helicase-associated domainDomain
X [auth NS]IPR011545DEAD/DEAH-box helicase domainDomain
X [auth NS]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Y [auth NW]IPR004977Small ribosomal subunit protein eS25Family
Y [auth NW]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
Z [auth SH]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
Z [auth SH]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
Z [auth SH]IPR000228RNA 3'-terminal phosphate cyclaseFamily
Z [auth SH]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
Z [auth SH]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
Z [auth SH]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
Z [auth SH]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
Z [auth SH]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
AA [auth SI]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
AA [auth SI]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
AA [auth SI]IPR003959ATPase, AAA-type, coreDomain
AA [auth SI]IPR012948AARP2CNDomain
AA [auth SI]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AA [auth SI]IPR030387Bms1/Tsr1-type G domainDomain
AA [auth SI]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
BA [auth SJ],
CA [auth SK]		IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
BA [auth SJ],
CA [auth SK]		IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
BA [auth SJ],
CA [auth SK]		IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
DA [auth SL]IPR002716PIN domainDomain
DA [auth SL]IPR006984Fcf1/UTP23Family
DA [auth SL]IPR029060PIN-like domain superfamilyHomologous Superfamily
DA [auth SL]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
EA [auth SM]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
EA [auth SM]IPR007109Brix domainDomain
FA [auth SR]IPR006032Small ribosomal subunit protein uS12Family
FA [auth SR]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FA [auth SR]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
GA [auth SS]IPR006709Small-subunit processome, Utp14Family
HA [auth ST]IPR007276Nucleolar protein 14Family
JA [auth SW]IPR041174KRR1 small subunit processome component, first KH domainDomain
JA [auth SW]IPR055212PNO1, first type I KH domainDomain
JA [auth SW]IPR055211PNO1, second type I KH domainDomain
JA [auth SW]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
G [auth L7]IPR000554Small ribosomal subunit protein eS7Family
G [auth L7]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
KA [auth SZ]IPR007955BystinFamily
IA [auth SU]IPR027193Nucleolar complex protein 4Family
IA [auth SU]IPR005612CCAAT-binding factorDomain
S [auth NG]IPR001971Small ribosomal subunit protein uS11Family
S [auth NG]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
S [auth NG]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
Q [auth NB]IPR018972Sas10 C-terminal domainDomain
Q [auth NB]IPR007146Sas10/Utp3/C1DFamily
J [auth LC]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
J [auth LC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
J [auth LC]IPR000754Small ribosomal subunit protein uS9Family
J [auth LC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth L2]M7G
GA [auth SS]SEP Parent Component: SER

RESID:  AA0037

PSI-MOD :  O-phospho-L-serine MOD:00046