7ZGD | pdb_00007zgd

Structure of yeast Sec14p with NPPM244

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	CRAL/TRIO N-terminal domain	8036679	3001241	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CRAL/TRIO domain	8043997	3001058	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CRAL_TRIO_N	e7zgdA2	A: alpha arrays	X: RuvA-C	H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology)	T: RuvA-C, UBA, CRAL/TRIO-N, HBS1	F: CRAL_TRIO_N	ECOD (1.6)
A	CRAL_TRIO	e7zgdA1	A: a/b three-layered sandwiches	X: SpoIIaa-like (From Topology)	H: SpoIIaa-like (From Topology)	T: SpoIIaa-like	F: CRAL_TRIO	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.8.20	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
A	3.40.525.10	Alpha Beta	3-Layer(aba) Sandwich	Phosphatidylinositol Transfer Protein Sec14p	CRAL-TRIO lipid binding domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00650	CRAL/TRIO domain (CRAL_TRIO)	CRAL/TRIO domain		Domain
A	PF03765	CRAL/TRIO, N-terminal domain (CRAL_TRIO_N)	CRAL/TRIO, N-terminal domain	This all-alpha domain is found to the N-terminus of Pfam:PF00650.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	SEC14 cytosolic factor	phosphatidylcholine transporter activity lipid transporter activity transporter activity phospholipid transporter activity phospholipid transfer activity lipid transfer activity phosphatidylinositol transfer activity	Golgi to plasma membrane transport establishment of protein localization cellular localization protein localization to cell periphery nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to membrane protein localization to plasma membrane establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport localization within membrane protein localization to membrane establishment of localization vesicle-mediated transport Golgi to plasma membrane transport establishment of protein localization cellular localization protein localization to cell periphery nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to membrane protein localization to plasma membrane establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport localization within membrane protein localization to membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization protein transport macromolecule localization cellular process intracellular protein localization Golgi vesicle transport intracellular transport Golgi to vacuole transport establishment of localization in cell vacuolar transport membrane organization vesicle budding from membrane Golgi vesicle budding cellular component organization vesicle organization organelle organization cellular component organization or biogenesis phospholipid transport lipid localization lipid transport organophosphate ester transport phosphatidylinositol metabolic process glycerophospholipid metabolic process primary metabolic process phospholipid metabolic process organophosphate metabolic process phosphate-containing compound metabolic process glycerolipid metabolic process metabolic process phosphorus metabolic process lipid metabolic process developmental process sexual sporulation resulting in formation of a cellular spore sexual reproduction cellular developmental process reproductive process reproductive process in single-celled organism meiotic cell cycle cell development developmental process involved in reproduction meiotic cell cycle process sporulation resulting in formation of a cellular spore anatomical structure morphogenesis ascospore formation sexual sporulation cell differentiation anatomical structure formation involved in morphogenesis anatomical structure development sporulation cell cycle cell cycle process phosphatidylglycerol metabolic process regulation of cellular process regulation of lipid metabolic process negative regulation of biological process regulation of phosphatidylglycerol biosynthetic process lipid biosynthetic process negative regulation of phosphate metabolic process negative regulation of lipid biosynthetic process regulation of primary metabolic process negative regulation of cellular process negative regulation of phospholipid biosynthetic process regulation of biosynthetic process regulation of biological process glycerophospholipid biosynthetic process negative regulation of metabolic process biological regulation regulation of phospholipid metabolic process phospholipid biosynthetic process regulation of phospholipid biosynthetic process negative regulation of phospholipid metabolic process negative regulation of phosphatidylglycerol biosynthetic process biosynthetic process glycerolipid biosynthetic process phosphatidylglycerol biosynthetic process negative regulation of biosynthetic process organophosphate biosynthetic process negative regulation of phosphorus metabolic process regulation of phosphorus metabolic process regulation of lipid biosynthetic process regulation of metabolic process negative regulation of lipid metabolic process negative regulation of phosphatidylcholine biosynthetic process phosphatidylcholine metabolic process regulation of phosphatidylcholine metabolic process phosphatidylcholine biosynthetic process regulation of phosphatidylcholine biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system Golgi membrane membrane bounding membrane of organelle organelle membrane cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001251	CRAL-TRIO lipid binding domain	Domain
A	IPR036865	CRAL-TRIO lipid binding domain superfamily	Homologous Superfamily
A	IPR051026	Phosphatidylinositol/phosphatidylcholine transfer	Family
A	IPR011074	CRAL/TRIO, N-terminal domain	Domain
A	IPR036273	CRAL/TRIO, N-terminal domain superfamily	Homologous Superfamily

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	MONOTOPIC MEMBRANE PROTEINS	Membrane Trafficking Proteins	Phosphatidylinositol transfer protein Sec14 with bound himbacine

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.