1GTN | pdb_00001gtn

Structure of the trp RNA-binding attenuation protein (TRAP) bound to an RNA molecule containing 11 GAGCC repeats

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
V	d1gtnv_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
U	d1gtnu_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
T	d1gtnt_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
S	d1gtns_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
R	d1gtnr_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
Q	d1gtnq_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
P	d1gtnp_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
O	d1gtno_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
N	d1gtnn_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
M	d1gtnm_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
L	d1gtnl_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
K	d1gtnk_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
J	d1gtnj_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
I	d1gtni_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
H	d1gtnh_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
G	d1gtng_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
F	d1gtnf_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
E	d1gtne_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
D	d1gtnd_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
C	d1gtnc_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
B	d1gtnb_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
A	d1gtna_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
V	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
V	TrpBP	e1gtnV1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
U	TrpBP	e1gtnU1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
T	TrpBP	e1gtnT1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
S	TrpBP	e1gtnS1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
R	TrpBP	e1gtnR1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
Q	TrpBP	e1gtnQ1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
P	TrpBP	e1gtnP1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
O	TrpBP	e1gtnO1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
N	TrpBP	e1gtnN1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
M	TrpBP	e1gtnM1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
L	TrpBP	e1gtnL1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
K	TrpBP	e1gtnK1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
J	TrpBP	e1gtnJ1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
I	TrpBP	e1gtnI1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
H	TrpBP	e1gtnH1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
G	TrpBP	e1gtnG1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
F	TrpBP	e1gtnF1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
E	TrpBP	e1gtnE1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
D	TrpBP	e1gtnD1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
C	TrpBP	e1gtnC1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
B	TrpBP	e1gtnB1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
A	TrpBP	e1gtnA1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
V	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
U	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
T	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
S	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
R	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
Q	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
P	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
O	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
N	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
M	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
L	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
K	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
J	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
I	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
H	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
G	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
F	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
E	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
D	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
C	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
B	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
A	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	PF02081	Tryptophan RNA-binding attenuator protein (TrpBP)	Tryptophan RNA-binding attenuator protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
W	(GAGCC)11G 56-NUCLEOTIDE RNA	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	TRP RNA-BINDING ATTENUATION PROTEIN	RNA binding binding nucleic acid binding identical protein binding protein binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR016031	Tryptophan RNA-binding attenuator protein-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR000824	Transcription attenuation protein MtrB	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR023558	Tryptophan RNA-binding attenuator protein domain	Domain